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Full Description
This volume describes the latest laboratory practices used in molecular biology ranging from python-based interactive notebooks, a virtual reality-based approach to biochemistry, and an open source in silico drug screening. The chapters in this book emphasize rigor, reproducibility, scalability, and ethical integration of new technologies, and also include a discussion on measuring aptamer-protein interactions to help inform these experimental approaches. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Cutting-edge and comprehensive, Transforming Molecular Biology with Emerging Technologies is a valuable resource for researchers who are interested in learning more about the ways that emerging technologies can help advance their studies in the field of molecular biology.
Contents
The MolecularWeb Universe: Web-Based, Immersive, Multiuser Molecular Graphics, and Modeling.- Python-Based Interactive Notebooks for Teaching AI and Data Science to Undergraduate Students in the Life Sciences.- Analysis of Complex Single-Molecule Kinetics: A Protocol for Single-Molecule Interaction Simulations (SMIS).- Prompt Engineering for Organic Chemistry Education: A Digital Loom-Based Approach.- Biochemistry in 3D: A Virtual Reality Museum Approach to Molecular Learning.- Molecular Modeling and Simulations of Biologics.- Generative AI Agents as Generalized Data Visualization Tools.- Interactive Dashboards for Modeling-Based Education: Methods and Best Practices with Python and Plotly Dash.- Fluorescence Anisotropy Applied to Measure Aptamer-Protein Interactions.- Gamification in Enzymology with CARBGAME (CARd and Board GAmes in Medical Education).- Developing an Educational Game on Protein Degradation.- Automated Assessment of Argumentation Skills in Chemistry-Related Socioscientific Issues using AI Chatbot.- Sodium Dodecyl Sulfate-Polyacrylamide Gel Electrophoresis (SDS-PAGE) with Activity Staining for Polyphenol Oxidase (PPO).- Integrating Maker Technology with Research: DIY Continuous Flow Colorimetric Detector with Integrated Data Acquisition and Processing.- Open-Sourced In Silico Drug Screening.- Exploring 3D Models via Extended Reality Tools using Common Smart Devices.- Molecular Architecture and Energy Visualization: Advancing Insights into Protein Structure, Interactions, and Activity.- Integrating ChatGPT into Biochemistry Education: A Practical Guide to Developing Interactive Learning Applications.- Automated Genetic Engineering in the Laboratory.
