Full Description
Many books explain the theory of atomistic computer simulations; this book teaches you how to run them
This introductory "how to" title enables readers to understand, plan, run, and analyze their own independent atomistic simulations, and decide which method to use and which questions to ask in their research project. It is written in a clear and precise language, focusing on a thorough understanding of the concepts behind the equations and how these are used in the simulations. As a result, readers will learn how to design the computational model and which parameters of the simulations are essential, as well as being able to assess whether the results are correct, find and correct errors, and extract the relevant information from the results. Finally, they will know which information needs to be included in their publications.
This book includes checklists for planning projects, analyzing output files, and for troubleshooting, as well as pseudo keywords and case studies.
The authors provide an accompanying blog for the book with worked examples, and additional material and references: http://www.atomisticsimulations.org/.
Contents
Part One: The World at the Atomic Scale
1 Atoms, Molecules and Crystals
2 Bonding
3 Chemical Reactions
4 What Exactly is Calculated?
Part Two: Introducing Equations to Describe the System
5 Total Energy Minimization
6 Molecular Dynamics and Monte Carlo
Part Three: Describing Interactions Between Atoms
7 Calculating Energies and Forces
8 Electronic Structure Methods
9 Density Functional Theory in Detail
Part Four: Setting Up and Running the Calculation
10 Planning a Project
11 Coordinates and Simulation Cells
12 The Nuts and Bolts
13 Tests
Part Five: Analyzing Results
14 Looking at Output Files
15 What to do with All the Numbers
16 Visualization
17 Electronic Structure Analysis
18 Comparison to Experiment
