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Full Description
Methods in microbial systematics have developed and changed significantly in the last 40 years. This has resulted in considerable change in both the defining microbial species and the methods required to make reliable identifications. Developments in information technology have enabled ready access to vast amounts of new and historic data online. Establishing both the relevance, and the most appropriate use, of this data is now a major consideration when undertaking identifications and systematic research. This book provides some insights into how current methods and resources are being used in microbial systematics, together with some thoughts and suggestions as to how both methodologies and concepts may develop in the future. It includes coverage of: The philosophy and changes in microbial systematics, including the relevance of names, new concepts of species, and the issues encountered with species that cannot be grown in culture. The application of new identification technologies, specifically those based on nucleic acids and complex chemo-taxonomic methods. The challenges of using published databases and other data resources in arriving at an identification appropriate to current species concepts. The practical requirements of an identification: obtaining and verifying reference cultures and data, and the type and level of identification required by different users. This book is suitable for academic researchers, scientists involved with identification or survey, microbiologists, students and extension workers.
Contents
Chapter 1: Bridging 200 years of bacterial classification Chapter 2: Identification of fungi: background, challenges and prospects Chapter 3: Names of microorganisms and data resources to retrieve information about published names Chapter 4: Preserving the reference strains Chapter 5: Can older fungal sequence data be useful? Chapter 6: Data resources: role and services of culture collections Chapter 7: MALDI TOF MS and currently related proteomic technologies in reconciling bacterial systematics Chapter 8: MALDI-TOF MS and its requirements for fungal identification Chapter 9: The strength of chemotaxonomy Chapter 10: Microbial Genomic Taxonomy Chapter 11: Navigating bacterial taxonomy in a world of unchartered microbial organisms Chapter 12: Sequence-based identification and classification of fungi Chapter 13: Identification and Classification of Prokaryotes Using Whole Genome Sequences Chapter 14: Genomic sequences for fungi Chapter 15: What can genome analysis offer for bacteria? Chapter 16: Genomes Reveal the Cohesiveness of Bacterial Species Taxa and Provide a Path Toward Describing All of Bacterial Diversity Chapter 17: Are species concepts outdated for Fungi? Intraspecific variation in plant-pathogenic fungi illustrates the need of subspecific categorization Chapter 18: Where to now
