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Full Description
This volume discusses the latest online plant genomics and cytogenetic resources used by plant evolutionary biologists and plant breeders. The chapters in this book are organized into two parts. Part One looks at plant genomic databases, and covers topics such as plant phenomics and genomics research data repositories, InpactorDB, PlanTEenrichment, and PEATmoss, among others. Part Two looks at cytogenetics and chromosome-related databases, and covers resources such as the Plant DNA C-values database, the Delphineae Chromosome Database (DCDB), B-chrom, a Database on B-chromosomes, and the Plant Ribosomal DNA Database. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective databases and offers explicit directions on how to access and get the most of these resources.
Cutting-edge and comprehensive, Plant Genomic and Cytogenetic Databases is a valuable instrument for any plant science researcher who is interested in learning more about the wealth of information that is available through the use of these databases.
Contents
The Plant Phenomics and Genomics Research Data Repository: An On-Premise Approach for FAIR Compliant Data Acquisition.- Investigating Pangenome Graphs using Wheat Panache.- InpactorDB: A Plant LTR Retrotransposon Reference Library.- TEMM: A Curated Data Resource for Transposon Element-Based Molecular Markers in Plants.- PlanTEnrichment: A How-To Guide on Rapid Identification of TEs Associated with Regions of Interest in Select Plant Genomes.- CicerSpTEdb2.0: An Upgrade of Cicer Species Transposable Elements Database.- 'BIFloraExplorer': A Taxonomic, Genetic, and Ecological Data Resource for the Vascular Plants of Britain and Ireland.- PEATmoss: A Gene Expression Atlas for Bryophytes.- The Plant DNA C-Values Database: A One-Stop Shop for Plant Genome Size Data.- The Chromosome Counts Database (CCDB).- CromoCat: Chromosome Database of the Vascular Flora of the Catalan Countries - 25 Years.- An Overview to the Index to ChromosomeNumbers in Asteraceae Database: Revisiting Base Chromosome Numbers, Polyploidy, Descending Dysploidy, and Hybridization.- DCDB: Chromosome Database of Tribe Delphinieae (Ranunculaceae): Structure, Exploitation, and Recent Development.- Chilean Plants Cytogenetic Database: An Online Resource for Embryophytes of the Southern Cone.- The Data Portal "Chromosome Numbers of the Flora of Germany": Progress After Five Years, Recent Developments, and Future Strategies.- South American Plant Chromosome Numbers Databases: The Information We Have and the Information We Lack on the Most Plant-Diverse Continent.- First Update to B-Chrom: A Database on B-Chromosomes.- Release 4.0 of the Plant rDNA Database: A Database on Plant Ribosomal DNA loci Number, Their Position, and Organization - An Information Source for Comparative Cytogenetics.
